Some burrs are crumbly and wire-like. They can be cleaned off by using very light, cleaning strokes on the stones for the last few rounds. Also, increasing the angle and using light strokes works. Another method is to run the edge lightly through soft wood. I once saw a burr like this get raked off by making a gentle stroke on the corner of a SharpMaker rod. You could see the thing peel off.
Other burrs are more deeply rooted and tenacious. Instead of a nearly detached, wire like burr, these are more like the edge is just curled at the microscopic level. This type is more problematic and is what I usually get on the SharpMaker. I think the back-and-forth action of the SharpMaker tends to limit burr formation except for this type. Using heavy strokes encourages these to form. Once they form, they won't go away. They just flop back and forth when you try and remove them. You either just align the thing straight with the edge and live with it, or you cut it away by making direct perpendicular cuts into the stone (light pressure) to square off the edge in preparation for your next attempt at forming a clean edge. 420HC behaves this way on the SharpMaker for me. I can't make it go away once it forms. I use very light pressure to avoid these. Another strategy is to start by using diamond stones to form a clean bevel intersection and then use the ceramic rods to refine and polish. The diamond abrasives cut more cleanly whereas the ceramics tend to push metal around more blunt like.